From 4f383528ea23e39b6f1a92a0c307518427b96109 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Mon, 29 Jan 2018 15:52:33 +0100
Subject: [PATCH] add mkdir statement
---
cutadapt.wdl | 1 +
1 file changed, 1 insertion(+)
diff --git a/cutadapt.wdl b/cutadapt.wdl
index afa1b29..4a94961 100644
--- a/cutadapt.wdl
+++ b/cutadapt.wdl
@@ -57,6 +57,7 @@ task cutadapt {
command {
set -e -o pipefail
+ mkdir -p $(dirname ${read1output})
${preCommand}
cutadapt \
${"--cores=" + cores} \
--
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