From 49a812e7b13de0643b0d2bf1dca588a16074a2c5 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Thu, 13 Sep 2018 07:43:38 +0200
Subject: [PATCH] fix travis file
---
.travis.yml | 2 +-
biopet/seqstat.wdl | 2 ++
2 files changed, 3 insertions(+), 1 deletion(-)
diff --git a/.travis.yml b/.travis.yml
index 88b4b9b..4065d1c 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -4,6 +4,6 @@ script:
- export CROMWELL_VERSION=34
# - wget https://github.com/broadinstitute/cromwell/releases/download/$CROMWELL_VERSION/womtool-$CROMWELL_VERSION.jar
- wget https://barmsijs.lumc.nl/womtool-35-a7ae2d8-SNAP.jar
-- for F in *.wdl; do echo $F; java -jar womtool-*.jar validate $F; done
+- for F in `find -name "*.wdl"`; do echo $F; java -jar womtool-*.jar validate $F; done
- 'if [ "$TRAVIS_PULL_REQUEST" != "false" ]; then git submodule foreach --recursive git checkout $TRAVIS_BRANCH && git submodule foreach --recursive git pull; fi'
- "git diff --exit-code || (echo ERROR: Git changes detected. Please update submodules && exit 1)"
diff --git a/biopet/seqstat.wdl b/biopet/seqstat.wdl
index 1a1651e..a9c24dc 100644
--- a/biopet/seqstat.wdl
+++ b/biopet/seqstat.wdl
@@ -2,6 +2,8 @@ version 1.0
# Copyright Sequencing Analysis Support Core - Leiden University Medical Center 2018
+import "../common.wdl" as common
+
task Generate {
input {
String? preCommand
--
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