diff --git a/gatk.wdl b/gatk.wdl index 3d4bf9231de1cc4259e10ca1c9ba9cebc34ae4e6..1f76099f1d66d8d8c829348f7e8bf94fe386fb22 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -373,7 +373,7 @@ task SplitNCigarReads { output { File bam = outputBam - File bamIndex = sub(outputBam, "\\.bam$", ".bai") + File bamIndex = sub(outputBam, "\.bam$", ".bai") } runtime {