From 474c1d39ae58dcf8f66675e6a1b4382dbb3afa41 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Tue, 25 Feb 2020 11:24:35 +0100
Subject: [PATCH] add allStats output
---
rtg.wdl | 12 ++++++++++++
1 file changed, 12 insertions(+)
diff --git a/rtg.wdl b/rtg.wdl
index 278fd01..bc2caef 100644
--- a/rtg.wdl
+++ b/rtg.wdl
@@ -110,6 +110,18 @@ task VcfEval {
File nonSnpRoc = outputDir + "/non_snp_roc.tsv.gz"
File phasing = outputDir + "/phasing.txt"
File weightedRoc = outputDir + "/weighted_roc.tsv.gz"
+ Array[File] allStats = [falseNegativesVcf,
+ falseNegativesVcfIndex,
+ falsePositivesVcf,
+ falsePositivesVcfIndex,
+ truePositivesBaselineVcf,
+ truePositivesBaselineVcfIndex,
+ truePositivesVcf,
+ truePositivesVcfIndex,
+ summary,
+ nonSnpRoc,
+ phasing,
+ weightedRoc]
}
runtime {
--
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