diff --git a/rtg.wdl b/rtg.wdl index 278fd01576343293f5c97a37e220733f44c76d1c..bc2caef689878ea70e4db97b1806725cc5822f49 100644 --- a/rtg.wdl +++ b/rtg.wdl @@ -110,6 +110,18 @@ task VcfEval { File nonSnpRoc = outputDir + "/non_snp_roc.tsv.gz" File phasing = outputDir + "/phasing.txt" File weightedRoc = outputDir + "/weighted_roc.tsv.gz" + Array[File] allStats = [falseNegativesVcf, + falseNegativesVcfIndex, + falsePositivesVcf, + falsePositivesVcfIndex, + truePositivesBaselineVcf, + truePositivesBaselineVcfIndex, + truePositivesVcf, + truePositivesVcfIndex, + summary, + nonSnpRoc, + phasing, + weightedRoc] } runtime {