From 468485632e11de05b0a385c0dc6b7460663e9644 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Wed, 20 Jun 2018 11:40:48 +0200
Subject: [PATCH] change memory params
---
biopet.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/biopet.wdl b/biopet.wdl
index c1bf0d6..1f04df3 100644
--- a/biopet.wdl
+++ b/biopet.wdl
@@ -313,7 +313,7 @@ task ValidateFastq {
Float? memory
Float? memoryMultiplier
- Int mem = ceil(select_first([memory, 2.0]))
+ Int mem = ceil(select_first([memory, 4.0]))
String toolCommand = if defined(toolJar)
then "java -Xmx" + mem + "G -jar " + toolJar
@@ -330,7 +330,7 @@ task ValidateFastq {
File stderr = stderr()
}
runtime {
- memory: ceil(mem * select_first([memoryMultiplier, 1.5]))
+ memory: ceil(mem * select_first([memoryMultiplier, 2.0]))
}
}
--
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