diff --git a/gridss.wdl b/gridss.wdl index 6c8899e4f27791e4e2a77a75681b85c12d8311bd..f9a92f563cc0a78bb38b219f7b7ed716f2934ce1 100644 --- a/gridss.wdl +++ b/gridss.wdl @@ -167,7 +167,7 @@ task GridssAnnotateVcfRepeatmasker { } command { - gridss_annotate_vcf_repeatmasker + gridss_annotate_vcf_repeatmasker \ --output ~{outputPath} \ --jar /usr/local/share/gridss-2.12.0-1/gridss.jar \ -w . \