From 44a372eda41c9b37e3e28d2aa4d67bf5340827b4 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Mon, 18 May 2020 10:12:03 +0200
Subject: [PATCH] add reportfile output to star
---
star.wdl | 1 +
1 file changed, 1 insertion(+)
diff --git a/star.wdl b/star.wdl
index 4c40733..5d0d6b6 100644
--- a/star.wdl
+++ b/star.wdl
@@ -127,6 +127,7 @@ task Star {
output {
File bamFile = outFileNamePrefix + "Aligned." + samOutputNames[outSAMtype]
+ File logFinalOut = outFileNamePrefix + "Log.final.out"
}
runtime {
--
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