diff --git a/bwa.wdl b/bwa.wdl index 7c4627a17b257b8f67710a57efcc2357de1df13e..9c717ccd789bdde15d9a5f033f7efa82d49386be 100644 --- a/bwa.wdl +++ b/bwa.wdl @@ -12,7 +12,7 @@ task Mem { String? picardJar - Int threads = 1 + Int threads = 2 Int memory = 8 Int picardMemory = 4 } diff --git a/gatk.wdl b/gatk.wdl index a43240529c85880d139b85c6c0f6a6a86298a8c9..512666fc2a863e4a7a5113305866221b0c63a7a5 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -187,7 +187,7 @@ task GenotypeGVCFs { input { String? preCommand Array[File]+ gvcfFiles - Array[File]+ gvcfFileIndex + Array[File]+ gvcfFilesIndex Array[File]+ intervals String outputPath