From 440489bc5f1ad8a016fe444ca1ced20c49bd5385 Mon Sep 17 00:00:00 2001
From: ffinfo <pjrvanthof@gmail.com>
Date: Thu, 13 Sep 2018 11:29:00 +0200
Subject: [PATCH] Switch to file based md5

---
 common.wdl | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/common.wdl b/common.wdl
index 34c0315..53015ac 100644
--- a/common.wdl
+++ b/common.wdl
@@ -24,13 +24,14 @@ task AppendToStringArray {
 task CheckFileMD5 {
     input {
         File file
-        String MD5sum
+        File md5
     }
 
     command {
         set -e -o pipefail
         MD5SUM=$(md5sum ~{file} | cut -d ' ' -f 1)
-        [ $MD5SUM = ~{MD5sum} ]
+        MD5SUM_CORRECT=$(cat ~{md5} | | grep ~{basename(file)} | cut -d ' ' -f 1)
+        [ $MD5SUM = $MD5SUM_CORRECT ]
     }
 }
 
-- 
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