From 3f54ab637e75994016af4a61f7e99058d4d308dc Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Fri, 10 Aug 2018 09:25:03 +0200
Subject: [PATCH] use proper perl-style regexes
---
fastqc.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/fastqc.wdl b/fastqc.wdl
index 6d924cf..f1d2388 100644
--- a/fastqc.wdl
+++ b/fastqc.wdl
@@ -21,10 +21,10 @@ task Fastqc {
}
# Chops of the .gz extension if present.
- String name = sub(seqFile, "\\.gz$","")
+ String name = sub(seqFile, "\.gz$","")
# This regex chops of the extension and replaces it with _fastqc for the reportdir.
# Just as fastqc does it.
- String reportDir = outdirPath + "/" + sub(basename(name), "\\.[^\\.]*$", "_fastqc")
+ String reportDir = outdirPath + "/" + sub(basename(name), "\.[^\.]*$", "_fastqc")
command {
set -e -o pipefail
--
GitLab