diff --git a/gatk.wdl b/gatk.wdl index 144d57390a9012704f2a757be3e50801cddd7041..e04d499699b050ae0ee887cefb7457dc7e3b4b07 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -115,7 +115,7 @@ task BaseRecalibrator { recalibrationReportPath: {description: "The location to write the BQSR report to.", category: "required"} sequenceGroupInterval: {description: "Bed files describing the regions to operate on.", category: "advancded"} knownIndelsSitesVCFs: {description: "VCf files with known indels.", category: "advanced"} - knownIndelsSitesVCFIndexes: {description: "The indexed for the known variant VCFs", category: "advanced"} + knownIndelsSitesVCFIndexes: {description: "The indexed for the known variant VCFs.", category: "advanced"} dbsnpVCF: {description: "A dbSNP VCF.", category: "common"} dbsnpVCFIndex: {description: "The index for the dbSNP VCF.", category: "common"} referenceFasta: {description: "The reference fasta file which was also used for mapping.", @@ -125,7 +125,7 @@ task BaseRecalibrator { referenceFastaFai: {description: "The index for the reference fasta file.", category: "required"} memory: {description: "The amount of memory this job will use.", category: "advanced"} - javaXmx: {description: "The maximum memory available to the program. Should be lower than `memory` to accommodate JVM overhead.)", + javaXmx: {description: "The maximum memory available to the program. Should be lower than `memory` to accommodate JVM overhead.", category: "advanced"} dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.", category: "advanced"}