diff --git a/gatk.wdl b/gatk.wdl index 18829f1c3a8a0bc1ad7bd751018b64d2a577cbfa..300c2d40f056218be27fe85d31dcb7e017a28e15 100644 --- a/gatk.wdl +++ b/gatk.wdl @@ -215,7 +215,6 @@ task GenotypeGVCFs { ${preCommand} ${toolCommand} \ - -Xmx${mem}G -jar ${gatkJar} \ GenotypeGVCFs \ -R ${refFasta} \ -O ${outputPath} \ @@ -266,7 +265,6 @@ task HaplotypeCallerGvcf { set -e -o pipefail ${preCommand} ${toolCommand} \ - -Xmx${mem}G -jar ${gatkJar} \ HaplotypeCaller \ -R ${refFasta} \ -O ${gvcfPath} \