From 379d0be3671d7c6aee65b8e18a73798f1ef80733 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Wed, 2 Jun 2021 10:25:03 +0200
Subject: [PATCH] fix some runtime settings
---
cutadapt.wdl | 2 +-
multiqc.wdl | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/cutadapt.wdl b/cutadapt.wdl
index b2dbdec..b49a95d 100644
--- a/cutadapt.wdl
+++ b/cutadapt.wdl
@@ -83,7 +83,7 @@ task Cutadapt {
Boolean? noZeroCap
Int cores = 4
- String memory = "~{300 + 100 * cores}M"
+ String memory = "5G"
Int timeMinutes = 1 + ceil(size([read1, read2], "G") * 12.0 / cores)
String dockerImage = "quay.io/biocontainers/cutadapt:2.10--py37hf01694f_1"
}
diff --git a/multiqc.wdl b/multiqc.wdl
index 2571463..a166293 100644
--- a/multiqc.wdl
+++ b/multiqc.wdl
@@ -57,7 +57,7 @@ task MultiQC {
String? clConfig
String? memory
- Int timeMinutes = 2 + ceil(size(reports, "G") * 8)
+ Int timeMinutes = 10 + ceil(size(reports, "G") * 8)
String dockerImage = "quay.io/biocontainers/multiqc:1.9--py_1"
}
--
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