From 372db4ea59ca711c4ab703eb9c71694c9b4cc4d4 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Thu, 17 May 2018 14:19:44 +0200
Subject: [PATCH] fix output samtools index
---
samtools.wdl | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/samtools.wdl b/samtools.wdl
index bbd4367..aaa7ee3 100644
--- a/samtools.wdl
+++ b/samtools.wdl
@@ -1,8 +1,7 @@
task Index {
String? preCommand
File bamFilePath
-
- String bamIndexPath = bamFilePath + ".bai"
+ String bamIndexPath
command {
set -e -o pipefail
--
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