From 35751a5fb1f1e32f9dd4be01cccd466e23d3b71f Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Tue, 5 Mar 2019 14:05:56 +0100
Subject: [PATCH] memory adjustments
---
biopet/biopet.wdl | 2 +-
picard.wdl | 4 ++--
vardict.wdl | 2 +-
3 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/biopet/biopet.wdl b/biopet/biopet.wdl
index 251208b..88d9d49 100644
--- a/biopet/biopet.wdl
+++ b/biopet/biopet.wdl
@@ -242,7 +242,7 @@ task ScatterRegions {
File? regions
Boolean notSplitContigs = false
- Int memory = 4
+ Int memory = 8
Float memoryMultiplier = 3.0
String dockerTag = "0.2--0"
}
diff --git a/picard.wdl b/picard.wdl
index bf5e88b..779b19e 100644
--- a/picard.wdl
+++ b/picard.wdl
@@ -308,7 +308,7 @@ task MergeVCFs {
Array[File]+ inputVCFsIndexes
String outputVcfPath
- Int memory = 4
+ Int memory =
Float memoryMultiplier = 3.0
String dockerTag = "2.18.26--0"
}
@@ -412,7 +412,7 @@ task SortVcf {
String outputVcfPath
File? dict
- Int memory = 4
+ Int memory = 8
Float memoryMultiplier = 3.0
String dockerTag = "2.18.26--0"
}
diff --git a/vardict.wdl b/vardict.wdl
index 6ad4622..e0ce90c 100644
--- a/vardict.wdl
+++ b/vardict.wdl
@@ -17,7 +17,7 @@ task VarDict {
Int endColumn = 3
Int geneColumn = 4
- Int memory = 8
+ Int memory = 16
Float memoryMultiplier = 2.0
String dockerTag = "1.5.8--1"
--
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