From 33f3aa9abe036e56b685c84dae088dd78c1228b4 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Tue, 20 Mar 2018 10:13:34 +0100
Subject: [PATCH] add fasta index and dict
---
gatk.wdl | 2 ++
1 file changed, 2 insertions(+)
diff --git a/gatk.wdl b/gatk.wdl
index 2a2b2b0..ab1c215 100644
--- a/gatk.wdl
+++ b/gatk.wdl
@@ -200,6 +200,8 @@ task SplitNCigarReads {
File input_bam
File ref_fasta
+ File ref_fasta_index
+ File ref_dict
String output_bam
String gatk_jar
--
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