From 328ae634df90bca33366b8c6d68b4fd0e941e2bf Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Wed, 12 Sep 2018 11:42:24 +0200
Subject: [PATCH] request dict
---
biopet/bamstats.wdl | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/biopet/bamstats.wdl b/biopet/bamstats.wdl
index 62542f2..8459ca4 100644
--- a/biopet/bamstats.wdl
+++ b/biopet/bamstats.wdl
@@ -14,6 +14,7 @@ task Generate {
Boolean tsvOutputs = false
String outputDir
File? reference
+ File? referenceDict
Int memory = 4
Float memoryMultiplier = 2.0
}
@@ -32,7 +33,7 @@ task Generate {
~{"--reference " + reference} \
~{true="--onlyUnmapped" false="" onlyUnmapped} \
~{true="--scatterMode" false="" scatterMode} \
- ~{true="--tsvOutputs" false="" tsvOutputs}
+ ~{true="--tsvOutputs" false="" tsvOutputs} \
--outputDir ~{outputDir}
}
--
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