diff --git a/star.wdl b/star.wdl index c262dc543b5260fdbdf2b064ebd0f80f699bde04..4b204eb4d1955f707b62c5a56ee4ecace47759a9 100644 --- a/star.wdl +++ b/star.wdl @@ -102,9 +102,10 @@ task Star { Int? limitBAMsortRAM Int runThreadN = 4 - String memory = "~{5 + ceil(size(indexFiles, "G"))}G" - # 1 minute initialization + time reading in index + time aligning data. - Int timeMinutes = 1 + ceil(size(indexFiles, "G") / 2) + ceil(size(flatten([inputR1, inputR2]), "G") * 180 / runThreadN) + # Use a margin of 30% index size. Real memory usage is ~30 GiB for a 27 GiB index. + String memory = "~{1 + ceil(size(indexFiles, "G") * 1.3)}G" + # 1 minute initialization + time reading in index (1 minute per G) + time aligning data. + Int timeMinutes = 1 + ceil(size(indexFiles, "G")) + ceil(size(flatten([inputR1, inputR2]), "G") * 180 / runThreadN) String dockerImage = "quay.io/biocontainers/star:2.7.3a--0" }