From 2f1e467cee9586fe8f6f78aa6f97f290333ce714 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Tue, 19 Jun 2018 16:29:17 +0200
Subject: [PATCH] remove duplicate jar and mem

---
 gatk.wdl | 1 -
 1 file changed, 1 deletion(-)

diff --git a/gatk.wdl b/gatk.wdl
index 66ff1a2..fbbc813 100644
--- a/gatk.wdl
+++ b/gatk.wdl
@@ -25,7 +25,6 @@ task ApplyBQSR {
         set -e -o pipefail
         ${preCommand}
         ${toolCommand} \
-        -Xms${mem}G -jar ${gatkJar} \
           ApplyBQSR \
           --create-output-bam-md5 \
           --add-output-sam-program-record \
-- 
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