From 2dc14b39d06dcc1c8161a9bf5840ebe5d88ccb25 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Tue, 25 Oct 2022 14:33:20 +0200
Subject: [PATCH] Make index use the basename of the file
---
samtools.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/samtools.wdl b/samtools.wdl
index e1b0817..bee38d1 100644
--- a/samtools.wdl
+++ b/samtools.wdl
@@ -470,7 +470,7 @@ task Sort {
task Tabix {
input {
File inputFile
- String outputFilePath = "indexed.vcf.gz"
+ String outputFilePath = basename(inputFile)
String type = "vcf"
Int timeMinutes = 1 + ceil(size(inputFile, "GiB") * 2)
--
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