From 282dacb0b753b3bf2b1b59be880ba9e3d9781b7f Mon Sep 17 00:00:00 2001
From: imoustakas <i.moustakas@lumc.nl>
Date: Tue, 25 Sep 2018 14:32:19 +0200
Subject: [PATCH] Attempt to match sample with control and call macs2

---
 macs2.wdl | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/macs2.wdl b/macs2.wdl
index fd2dd6f..57f75f1 100644
--- a/macs2.wdl
+++ b/macs2.wdl
@@ -5,10 +5,10 @@ import "common.wdl"
 task PeakCalling {
     input {
         String? preCommand
-        Array[File]+ inputBams
-        Array[File]+ inputBamsIndex
-        Array[File]? controlBams
-        Array[File]? controlBamsIndex
+        File inputBams
+        File inputBamsIndex
+        File? controlBams
+        File? controlBamsIndex
         String outDir
         String sampleName
         Int threads = 1
-- 
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