From 26ee393b40ca25d92a470101996e3212fb1cfff9 Mon Sep 17 00:00:00 2001
From: ffinfo <pjrvanthof@gmail.com>
Date: Thu, 13 Sep 2018 11:49:09 +0200
Subject: [PATCH] WIP
---
samtools.wdl | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/samtools.wdl b/samtools.wdl
index 0d43015..ab2c84e 100644
--- a/samtools.wdl
+++ b/samtools.wdl
@@ -36,10 +36,9 @@ task Index {
}
output {
- File index = select_first(flatten([[bamIndexPath], glob(sub(basename(bamFile), "\.bam$", "") + "*.bai")]))
IndexedBamFile outputBam = object {
file: bamFile,
- index: index
+ index: select_first(flatten([[bamIndexPath], glob(sub(basename(bamFile), "\.bam$", "") + "*.bai")]))
}
}
}
--
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