From 24a6f1104c3a05053931b37db3fb8f3dd1e178b1 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Mon, 31 May 2021 14:19:34 +0200
Subject: [PATCH] fix gffcompare
---
gffcompare.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/gffcompare.wdl b/gffcompare.wdl
index 8b13547..5c83ba9 100644
--- a/gffcompare.wdl
+++ b/gffcompare.wdl
@@ -91,7 +91,7 @@ task GffCompare {
else 0
Int noInputFiles = length(inputGtfFiles)
Boolean oneFile = (noFilesGtfList + noInputFiles) == 1
- String annotatedName = if oneFile
+ String annotatedName = if oneFile && defined(referenceAnnotation)
then "annotated"
else "combined"
--
GitLab