diff --git a/biopet/biopet.wdl b/biopet/biopet.wdl index 52180b8b1e7b4601188e51645da90a8ad96a181d..15f0771381d81ae668aaf25d8e173b3551bfd8d9 100644 --- a/biopet/biopet.wdl +++ b/biopet/biopet.wdl @@ -179,7 +179,7 @@ task FastqSync { output { FastqPair out1 = object { R1: out1path, - R1: out2path + R2: out2path } } diff --git a/common.wdl b/common.wdl index d5db7685565de1d563ddf2b74ef57396a919035f..7b85d461c58869e45cc818344ffb4d24e2f293d2 100644 --- a/common.wdl +++ b/common.wdl @@ -131,23 +131,6 @@ task MapMd5 { } } -task ObjectMd5 { - input { - Object the_object - } - - command { - cat ~{write_object(the_object)} | md5sum - | sed -e 's/ -//' - } - - output { - String md5sum = read_string(stdout()) - } - - runtime { - memory: 1 - } -} task StringArrayMd5 { input {