diff --git a/CHANGELOG.md b/CHANGELOG.md index bde1b766462beba41706494ea7b33bf9874a117f..c38544b73ab3e1f80d2c870e3298254184533556 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,6 +11,10 @@ that users understand how the changes affect the new version. version 4.0.0-develop --------------------------- ++ The FastQC task now talks to the Java directly instead of using the included + Perl wrapper for FastQC. This has the advantage that memory and threads can + be set independently. A rather high maximum heap size of 1750MB (Xmx1750M) + was set, as OOM errors occurred frequently on some fastqs. + Take into account reference fasta size for Picard metrics. + Take into account index size for STAR alignment time requirement. + Added a log output for STAR.