diff --git a/picard.wdl b/picard.wdl index 5393cd3a30487f4cda0a40b4744717a9ad6ad505..e92755045485b108a502025e5d2f6112ccc40264 100644 --- a/picard.wdl +++ b/picard.wdl @@ -114,7 +114,7 @@ task CollectMultipleMetrics { File baitBiasDetail = basename + ".bait_bias_detail_metrics" File baitBiasSummary = basename + ".bait_bias_summary_metrics" File baseDistributionByCycle = basename + ".base_distribution_by_cycle_metrics" - File baseDistributionByCyclePdf = basename + ".base_distribution_by_cycle.pdf" + File? baseDistributionByCyclePdf = basename + ".base_distribution_by_cycle.pdf" File errorSummary = basename + ".error_summary_metrics" File gcBiasDetail = basename + ".gc_bias.detail_metrics" File gcBiasPdf = basename + ".gc_bias.pdf" @@ -124,9 +124,9 @@ task CollectMultipleMetrics { File preAdapterDetail = basename + ".pre_adapter_detail_metrics" File preAdapterSummary = basename + ".pre_adapter_summary_metrics" File qualityByCycle = basename + ".quality_by_cycle_metrics" - File qualityByCyclePdf = basename + ".quality_by_cycle.pdf" + File? qualityByCyclePdf = basename + ".quality_by_cycle.pdf" File qualityDistribution = basename + ".quality_distribution_metrics" - File qualityDistributionPdf = basename + ".quality_distribution.pdf" + File? qualityDistributionPdf = basename + ".quality_distribution.pdf" File qualityYield = basename + ".quality_yield_metrics" # Using a glob is easier. But will lead to very ugly output directories. Array[File] allStats = select_all([