From 15b12101e04df8d842f68cb5ddef7f7f8a932a9e Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Fri, 24 Sep 2021 14:55:43 +0200
Subject: [PATCH] fix protect command with multiple doids
---
hmftools.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/hmftools.wdl b/hmftools.wdl
index 1e25938..199d7d8 100644
--- a/hmftools.wdl
+++ b/hmftools.wdl
@@ -577,7 +577,7 @@ task Protect {
-ref_genome_version ~{refGenomeVersion} \
-tumor_sample_id ~{tumorName} \
-reference_sample_id ~{normalName} \
- -primary_tumor_doids ~{sep=";" sampleDoids} \
+ -primary_tumor_doids '~{sep=";" sampleDoids}' \
-output_dir ~{outputDir} \
-serve_actionability_dir ~{sub(serveActionability[0], basename(serveActionability[0]), "")} \
-doid_json ~{doidsJson} \
--
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