From 14eae8b47b219379947a69ba63cf018be9b72d05 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Wed, 20 Feb 2019 13:29:03 +0100
Subject: [PATCH] fix a few things in biopet
---
biopet/biopet.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/biopet/biopet.wdl b/biopet/biopet.wdl
index 5a54e37..e513dfe 100644
--- a/biopet/biopet.wdl
+++ b/biopet/biopet.wdl
@@ -224,7 +224,7 @@ task ReorderGlobbedScatters {
>>>
output {
- Array[String] reorderedScatters = read_lines(stdout())
+ Array[File] reorderedScatters = read_lines(stdout())
}
runtime {
@@ -259,7 +259,7 @@ task ScatterRegions {
output {
File scatterDir = scatterTempDir
- Array[File] scatters = glob(scatterDir + "/scatter-*.bed")
+ Array[File] scatters = glob(scatterTempDir + "/scatter-*.bed")
}
runtime {
--
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