diff --git a/samtools.wdl b/samtools.wdl index 32cf622212a4f3d5489f914ee46c3b093567803e..1a6f10b40ef50293fe5f2bff4f1fcc87cd8f6116 100644 --- a/samtools.wdl +++ b/samtools.wdl @@ -187,7 +187,7 @@ task Tabix { String type = "vcf" String dockerTag = "0.2.6--ha92aebf_0" } - + # FIXME: It is better to do the indexing on VCF creation. Not in a separate task. With file localization this gets hairy fast. command { set -e mkdir -p $(dirname ~{outputFilePath})