From 13967b1793fc585d9f3753d87b618fd2c6819736 Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Thu, 11 Mar 2021 14:13:06 +0100
Subject: [PATCH] add array for circos confs
---
hmftools.wdl | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/hmftools.wdl b/hmftools.wdl
index 2fad41f..dc31f41 100644
--- a/hmftools.wdl
+++ b/hmftools.wdl
@@ -513,7 +513,7 @@ task Purple {
File somaticRainfallPlot = "~{outputDir}/plot/~{tumorName}.somatic.rainfall.png"
File purpleVersion = "~{outputDir}/purple.version"
File circosNormalRatio = "~{outputDir}/circos/~{normalName}.ratio.circos"
- File circosCond = "~{outputDir}/circos/~{tumorName}.circos.conf"
+ File circosConf = "~{outputDir}/circos/~{tumorName}.circos.conf"
File circosIndel = "~{outputDir}/circos/~{tumorName}.indel.circos"
File circosLink = "~{outputDir}/circos/~{tumorName}.link.circos"
File circosTumorRatio = "~{outputDir}/circos/~{tumorName}.ratio.circos"
@@ -530,7 +530,9 @@ task Purple {
purpleVersion]
Array[File] plots = [circosPlot, copynumberPlot, inputPlot, mapPlot, purityRangePlot,
segmentPlot, somaticClonalityPlot, somaticPlot, somaticRainfallPlot]
- Array[File] circos = []
+ Array[File] circos = [circosNormalRatio, circosConf, circosIndel, circosLink,
+ circosTumorRatio, circosGaps, circosBaf, circosCnv, circosInputConf, circosMap,
+ circosSnp]
}
runtime {
--
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