diff --git a/hmftools.wdl b/hmftools.wdl index 2fad41fe55c051604b02b571d844cc0ea2c1aac3..dc31f41b3a0d4b6102134beff9212d7a2ac78487 100644 --- a/hmftools.wdl +++ b/hmftools.wdl @@ -513,7 +513,7 @@ task Purple { File somaticRainfallPlot = "~{outputDir}/plot/~{tumorName}.somatic.rainfall.png" File purpleVersion = "~{outputDir}/purple.version" File circosNormalRatio = "~{outputDir}/circos/~{normalName}.ratio.circos" - File circosCond = "~{outputDir}/circos/~{tumorName}.circos.conf" + File circosConf = "~{outputDir}/circos/~{tumorName}.circos.conf" File circosIndel = "~{outputDir}/circos/~{tumorName}.indel.circos" File circosLink = "~{outputDir}/circos/~{tumorName}.link.circos" File circosTumorRatio = "~{outputDir}/circos/~{tumorName}.ratio.circos" @@ -530,7 +530,9 @@ task Purple { purpleVersion] Array[File] plots = [circosPlot, copynumberPlot, inputPlot, mapPlot, purityRangePlot, segmentPlot, somaticClonalityPlot, somaticPlot, somaticRainfallPlot] - Array[File] circos = [] + Array[File] circos = [circosNormalRatio, circosConf, circosIndel, circosLink, + circosTumorRatio, circosGaps, circosBaf, circosCnv, circosInputConf, circosMap, + circosSnp] } runtime {