From 1056a3e345fd0432f3019db8d6c9602628a5da08 Mon Sep 17 00:00:00 2001
From: imoustakas <i.moustakas@lumc.nl>
Date: Mon, 23 Jul 2018 13:47:31 +0200
Subject: [PATCH] Fix output directory
---
macs2.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/macs2.wdl b/macs2.wdl
index 9880c94..dd3226a 100644
--- a/macs2.wdl
+++ b/macs2.wdl
@@ -12,7 +12,7 @@ task PeakCalling {
${preCommand}
macs2 callpeak \
--treatment ${sep = ' ' bamFiles} \
- --outdir ${outDir} \
+ --outdir ${outDir} + "/macs2/" \
--name ${sampleName} \
${default=false true='--nomodel' false='' nomodel}
}
--
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