diff --git a/CPAT.wdl b/CPAT.wdl index 0c4e83db1f67d2a5fca475af8adb3076e73ed3d9..b92053d1e1fcdbe116fc845c845442fd1b7aeecc 100644 --- a/CPAT.wdl +++ b/CPAT.wdl @@ -11,7 +11,7 @@ task CPAT { # CPAT should not index the reference genome. Array[String]? startCodons Array[String]? stopCodons - String dockerTag = "v1.2.4_cv1" + String dockerImage = "biocontainers/cpat:v1.2.4_cv1" } # Some WDL magic in the command section to properly output the start and stopcodons to the command. @@ -34,7 +34,7 @@ task CPAT { } runtime { - docker: "biocontainers/cpat:" + dockerTag + docker: dockerImage } } diff --git a/gffread.wdl b/gffread.wdl index 08b2e8d7cc8195edd0da76a83625a5c91292f58d..da99781b99529b4e452ae301a6eb2e67c6e2ccaf 100644 --- a/gffread.wdl +++ b/gffread.wdl @@ -10,7 +10,7 @@ task GffRead { String? proteinFastaPath String? filteredGffPath Boolean outputGtfFormat = false - String dockerTag = "0.9.12--0" + String dockerImage = "quay.io/biocontainers/gffread:0.9.12--0" } # The mkdirs below are hackish. It should be @@ -41,6 +41,6 @@ task GffRead { } runtime { - docker: "quay.io/biocontainers/gffread:" + dockerTag + docker: dockerImage } } \ No newline at end of file