diff --git a/clever.wdl b/clever.wdl index 34a96122bca1556cdb7ecc808492c411a0a0a574..54f81082e77bd79713c26080e0cf6e3e2152f1f0 100644 --- a/clever.wdl +++ b/clever.wdl @@ -1,5 +1,5 @@ version 1.0 - +import "bwa.wdl" task Prediction { input { File bamFile @@ -30,7 +30,7 @@ task Prediction { runtime { cpu: threads - memory: mem + memory: memory docker: dockerImage } diff --git a/manta.wdl b/manta.wdl index 4b970fbca1d2877eb0fc7fb6620ebbc6f387e1be..09a7c4ed40a0b08e73e29970d55e17f42d109b88 100644 --- a/manta.wdl +++ b/manta.wdl @@ -88,7 +88,7 @@ task Germline { Boolean exome = false Int cores = 1 - String memory = "4G" + Int memoryGb = 4 } command { @@ -103,7 +103,7 @@ task Germline { ~{runDir}/runWorkflow.py \ -m local \ -j ~{cores} \ - -g ~{memory} + -g ~{memoryGb} } output { @@ -113,7 +113,7 @@ task Germline { runtime { cpu: cores - memory: memory + memory: "~{memoryGb}G" docker: dockerImage } } diff --git a/picard.wdl b/picard.wdl index 4abd7ce05608d10f45f03875c6ecc322f9a7e1d3..cd923bb7fa964cd8cc7ab1bb53d78ba7de45d8b1 100644 --- a/picard.wdl +++ b/picard.wdl @@ -638,7 +638,7 @@ task RenameSample { runtime { docker: dockerImage - memory = memory + memory: memory } }