From 0cedc9aae1af8aa34697aa406d1e474d7965b7da Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Wed, 18 Mar 2020 16:03:47 +0100
Subject: [PATCH] more threads for BWA by default
---
bwa.wdl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/bwa.wdl b/bwa.wdl
index 665b63c..4025610 100644
--- a/bwa.wdl
+++ b/bwa.wdl
@@ -28,7 +28,7 @@ task Mem {
String outputPath
String? readgroup
- Int threads = 2
+ Int threads = 4
String memory = "32G"
String picardXmx = "4G"
# A mulled container is needed to have both picard and bwa in one container.
--
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