From 0bf8c70fe80d991efbda9c97a393ec7be83fc11d Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Mon, 20 Aug 2018 10:12:09 +0200
Subject: [PATCH] change camelization
---
cutadapt.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/cutadapt.wdl b/cutadapt.wdl
index e89531b..0df1ced 100644
--- a/cutadapt.wdl
+++ b/cutadapt.wdl
@@ -61,12 +61,12 @@ task Cutadapt {
String? reportPath
}
- String read2outputarg = if (defined(read2output)) then "mkdir -p $(dirname " + read2output + ")" else ""
+ String read2outputArg = if (defined(read2output)) then "mkdir -p $(dirname " + read2output + ")" else ""
command {
set -e -o pipefail
~{"mkdir -p $(dirname " + read1output + ")"}
- ~{read2outputarg}
+ ~{read2outputArg}
~{"mkdir -p $(dirname " + reportPath + ")"}
~{preCommand}
cutadapt \
--
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