diff --git a/star.wdl b/star.wdl index da90516d3c098b8bcd1fa7ec448c6a9df5a4c7ba..6f95a637ad7e286ad7c2398d888ea0183e7104fa 100644 --- a/star.wdl +++ b/star.wdl @@ -123,10 +123,10 @@ task Star { --genomeDir ~{sub(indexFiles[0], basename(indexFiles[0]), "")} \ --outSAMtype ~{outSAMtype} \ --readFilesCommand ~{readFilesCommand} \ - --outFilterScoreMin ~{outFilterScoreMin} \ - --outFilterScoreMinOverLread ~{outFilterScoreMinOverLread} \ - --outFilterMatchNmin ~{outFilterMatchNmin} \ - --outFilterMatchNminOverLread ~{outFilterMatchNminOverLread} \ + ~{"--outFilterScoreMin " + outFilterScoreMin} \ + ~{"--outFilterScoreMinOverLread " + outFilterScoreMinOverLread} \ + ~{"--outFilterMatchNmin " + outFilterMatchNmin} \ + ~{"--outFilterMatchNminOverLread " + outFilterMatchNminOverLread} \ ~{"--outSAMunmapped " + outSAMunmapped} \ ~{"--runThreadN " + runThreadN} \ ~{"--outStd " + outStd} \