From 0a1995df4f853799cb945a2bc8d3ac0062039efd Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Tue, 9 Nov 2021 12:29:10 +0100
Subject: [PATCH] try version 2.11.1 for gridss
---
gridss.wdl | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/gridss.wdl b/gridss.wdl
index b36d659..5c267e7 100644
--- a/gridss.wdl
+++ b/gridss.wdl
@@ -34,7 +34,7 @@ task AnnotateInsertedSequence {
Int threads = 8
String javaXmx = "8G"
String memory = "9G"
- String dockerImage = "quay.io/biocontainers/gridss:2.12.0--h270b39a_1"
+ String dockerImage = "quay.io/biocontainers/gridss:2.11.1--hdfd78af_1"
Int timeMinutes = 120
}
@@ -96,7 +96,7 @@ task GRIDSS {
Int jvmHeapSizeGb = 64
Int threads = 8
Int timeMinutes = ceil(4320 / threads) + 10
- String dockerImage = "quay.io/biocontainers/gridss:2.12.0--h270b39a_1"
+ String dockerImage = "quay.io/biocontainers/gridss:2.11.1--hdfd78af_1"
}
command {
@@ -165,7 +165,7 @@ task GridssAnnotateVcfRepeatmasker {
String memory = "25G"
Int threads = 8
- String dockerImage = "quay.io/biocontainers/gridss:2.12.0--h270b39a_1"
+ String dockerImage = "quay.io/biocontainers/gridss:2.11.1--hdfd78af_1"
Int timeMinutes = 1440
}
@@ -213,7 +213,7 @@ task Virusbreakend {
String memory = "75G"
Int threads = 8
- String dockerImage = "quay.io/biocontainers/gridss:2.12.0--h270b39a_1"
+ String dockerImage = "quay.io/biocontainers/gridss:2.11.1--hdfd78af_1"
Int timeMinutes = 180
}
--
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