From 06ab2158616a1af8a0f06da74bdb1fdbfd3813a7 Mon Sep 17 00:00:00 2001
From: ffinfo <pjrvanthof@gmail.com>
Date: Mon, 20 Aug 2018 15:36:43 +0200
Subject: [PATCH] Fixing comments
---
biopet.wdl | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/biopet.wdl b/biopet.wdl
index a7cd28b..2c28fe3 100644
--- a/biopet.wdl
+++ b/biopet.wdl
@@ -256,13 +256,13 @@ task SampleConfigCromwellArrays {
}
String toolCommand = if defined(toolJar)
- then "java -Xmx" + memory + "G -jar " +toolJar
+ then "java -Xmx" + memory + "G -jar " + toolJar
else "biopet-sampleconfig -Xmx" + memory + "G"
command {
set -e -o pipefail
~{preCommand}
- mkdir -p . ~{"$(dirname " + outputPath + ")"}
+ mkdir -p $(dirname ~{outputPath})
~{toolCommand} CromwellArrays \
-i ~{sep="-i " inputFiles} \
~{"-o " + outputPath}
--
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