From 05fda96f208b5474cb9d517a3ef2c0e0514bd0c3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ant=C3=B3nio=20Paulo?= <antonio.do.paulo@ist.utl.pt> Date: Mon, 5 Aug 2019 19:15:17 +0200 Subject: [PATCH] update changelog --- CHANGELOG.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e362034..b8c3720 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,9 +11,10 @@ that users understand how the changes affect the new version. version 1.0.0-dev --------------------------- -+ Mutect2: Add GATK tasks related to variant filtering (LearnReadOrientationModel, MergeStats, GetPileupSummaries, CalculateContamination and FilterMutectCalls) ++ GATK: Add CombineVariants task that allows, e.g., to merge VCFs from different callers. ++ Mutect2: Add GATK tasks related to variant filtering (LearnReadOrientationModel, MergeStats, GetPileupSummaries, CalculateContamination and FilterMutectCalls). + Mutect2: Add "--germline-resource" and "--f1r2-tar-gz" inputs, requiring an update to GATK 4.1.2.0. -+ Mutect2: Add necessary missing index attribute for panel of normals ++ Mutect2: Add necessary missing index attribute for panel of normals. + VarDict: Add user definable flags (-M, -A, -Q, -d, -v, -f) to the paired VCF filtering script. + Cutadapt: If the output is a gzipped file, compress with level 1 (instead of default 6). + Cutadapt: Fix issues with read2output when using single-end reads. -- GitLab