From 0023ed3eff49eff9769dca5d5e2155b43a8e0ab4 Mon Sep 17 00:00:00 2001
From: Ruben Vorderman <r.h.p.vorderman@lumc.nl>
Date: Mon, 24 Feb 2020 15:47:26 +0100
Subject: [PATCH] add bedregions input

---
 rtg.wdl | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/rtg.wdl b/rtg.wdl
index ae1e515..bc5aa27 100644
--- a/rtg.wdl
+++ b/rtg.wdl
@@ -64,6 +64,7 @@ task VcfEval {
         File calls
         File callsIndex
         File? evaluationRegions
+        File? bedRegions
         String outputDir = "output/"
         String? region
         File template
@@ -85,6 +86,7 @@ task VcfEval {
         --baseline ~{baseline} \
         --calls ~{calls} \
         ~{"--evaluation-regions " + evaluationRegions} \
+        ~{"--bed-regions " + bedRegions} \
         --output ~{outputDir} \
         --template ~{template} \
         ~{true="--all-records" false="" allRecords} \
-- 
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