Added input files for benchmarking.

input_files/SKCM_genes.txt

+KIT
+PDGFRA
+KDR
+CDK4
+CCND1
+MDM2
+TERT
+BRAF
+MITF
+PD-L1
+NRAS
+CD274

input_files/intogen-CM-drivers-data.tsv

+BRAF	0.9995	CFR	222	perProject_driver
+NRAS	0.9965	CFR	104	perProject_driver
+TP53	0.007	CFR	60	perProject_driver
+CDKN2A	0.0315	CFR	60	perProject_driver
+PTEN	0.01	CFR	39	perProject_driver
+PPP6C	0.147	CF	36	perProject_driver
+IDH1	0.995	CFR	20	perProject_driver
+FBXW7	0.0335	CFR	16	perProject_driver
+MLL3	0.018	FR	118	perProject_driver
+NF1	0	FR	86	perProject_driver
+ARID2	0.0185	FR	60	perProject_driver
+CTNNB1	0.982	FR	24	perProject_driver
+MAP2K1	0.972	CF	24	perProject_driver
+CLCC1	0.7855		22	perProject_driver
+RAC1	0.8875	CF	20	perProject_driver
+CASP8	0.011	FR	14	perProject_driver
+ANK3	0.881	F	322	perProject_driver
+SVEP1	0.7	F	128	perProject_driver
+PCDH18	0.8215	F	115	perProject_driver
+MECOM	0.968	F	112	perProject_driver
+AHNAK	0.956	F	99	perProject_driver
+PLCB1	0.983		87	perProject_driver
+BCLAF1	0.9105	F	81	perProject_driver
+HDAC9	0.9045	F	81	perProject_driver
+COL1A1	0.977	F	67	perProject_driver
+ARHGAP29			59	perProject_driver
+ASPM	0.95	F	53	perProject_driver
+MAGI2			50	perProject_driver
+CHD6	0.973		48	perProject_driver
+USP6			48	perProject_driver
+TRERF1	0.9335		46	perProject_driver
+WNK1			44	perProject_driver
+TCF4	0.7465	F	43	perProject_driver
+C15orf55	0.698		41	perProject_driver
+MSR1	0.1325	F	38	perProject_driver
+BPTF	0.937	F	38	perProject_driver
+BLM	0.3155	F	37	perProject_driver
+PIK3C2B			36	perProject_driver
+BAZ2B	0.909	F	34	perProject_driver
+NCOR1	0.008	F	34	perProject_driver
+NUP98	0.7165	F	31	perProject_driver
+BRWD1	0.926	F	31	perProject_driver
+FCRL4			30	perProject_driver
+CHD9	0.7155	F	30	perProject_driver
+IRF7	0.807		30	perProject_driver
+EIF4G3	0.763		29	perProject_driver
+EIF4G1	0.8765	F	29	perProject_driver
+ARHGEF2	0.7575		29	perProject_driver
+SYK			27	perProject_driver
+EIF2AK3	0.038	F	27	perProject_driver
+POM121	0.913		27	perProject_driver
+FANCI			26	perProject_driver
+MAP3K11			26	perProject_driver
+ZNF638			24	perProject_driver
+CYTH4			24	perProject_driver
+LRPPRC	0.101		24	perProject_driver
+DDX3X	0.1495	F	24	perProject_driver
+STAG1	0.751	F	23	perProject_driver
+WASF3			23	perProject_driver
+RGS3	0.6595		23	perProject_driver
+PER1			23	perProject_driver
+ITGA9	0.9665		22	perProject_driver
+AHCTF1	0.565		22	perProject_driver
+AQR	0.7445	F	21	perProject_driver
+MAP3K4	0.7045	F	20	perProject_driver
+EZH2	0.179	F	19	perProject_driver
+LNPEP			19	perProject_driver
+CRTC3			18	perProject_driver
+MFNG	0.927		17	perProject_driver
+XRN1	0.388		17	perProject_driver
+CDK4			17	perProject_driver
+RASA2	0.1265		17	perProject_driver
+TAOK1	0.577	F	17	perProject_driver
+VIM			16	perProject_driver
+ERBB3	0.995		16	perProject_driver
+TJP2	0.7255	F	15	perProject_driver
+MCM3	0.832		14	perProject_driver
+SEC24D	0.0175	F	14	perProject_driver
+SMURF2			13	perProject_driver
+MCM8	0.932		12	perProject_driver
+COPS2	0.0355	F	12	perProject_driver
+MAT2A			12	perProject_driver
+ACSL3			10	perProject_driver
+ARHGEF6	0.214	F	10	perProject_driver
+JMY			10	perProject_driver
+FAF1	0.0145		10	perProject_driver
+RHOT1			9	perProject_driver
+DNMT3A	0.1995	CFR	13	Pooled_driver
+PIK3CA	0.999	CFR	13	Pooled_driver
+HRAS	0.922	CFR	8	Pooled_driver
+KRAS	0.9995	CFR	6	Pooled_driver
+STAG2	0.069	FR	68	Pooled_driver
+ATRX	0.0015	FR	33	Pooled_driver
+RB1	0.0005	FR	24	Pooled_driver
+CIC	0.079	FR	23	Pooled_driver
+WT1	0.062	FR	20	Pooled_driver
+RHOA	0.7335	FR	19	Pooled_driver
+CDKN1A	0.043	FR	15	Pooled_driver
+PIK3R1	0.0215	FR	15	Pooled_driver
+BAP1	0.0015	FR	15	Pooled_driver
+GATA3	0.012	FR	14	Pooled_driver
+KDM5C	0.137	FR	14	Pooled_driver
+ELF3	0.039	FR	14	Pooled_driver
+RUNX1	0.0015	FR	13	Pooled_driver
+CDH1	0.0035	FR	11	Pooled_driver
+MAP3K1	0.01	FR	11	Pooled_driver
+AKT1	0.9945	CF	11	Pooled_driver
+ACTG1	0.927	FR	11	Pooled_driver
+STK11	0.0025	FR	10	Pooled_driver
+SMAD4	0.016	FR	10	Pooled_driver
+KDM6A	0.0095	FR	10	Pooled_driver
+FUBP1	0.0195	FR	9	Pooled_driver
+CTCF	0.007	FR	8	Pooled_driver
+RPL5	0.059	FR	8	Pooled_driver
+B2M	0.032	FR	8	Pooled_driver
+MAP2K4	0.0225	FR	7	Pooled_driver
+NFE2L2	0.985	FR	7	Pooled_driver
+RPL22	0.089	FR	7	Pooled_driver
+SPOP	0.6705	CF	7	Pooled_driver
+RASA1	0.0085	FR	7	Pooled_driver
+SMAD2	0.0005	FR	7	Pooled_driver
+DDX5	0.126	FR	6	Pooled_driver
+ACVR2A	0.012	FR	6	Pooled_driver
+VHL	0.0105	FR	6	Pooled_driver
+IDH2	0.9945	CF	6	Pooled_driver
+PHF6	0.0205	FR	5	Pooled_driver
+NPM1	0.041	FR	4	Pooled_driver
+EIF1AX	0.194	FR	2	Pooled_driver
+PIK3CB	0.5845	F	38	Pooled_driver
+FN1	0.104	F	38	Pooled_driver
+LRP6	0.927	F	36	Pooled_driver
+MKL1	0.706	F	34	Pooled_driver
+ARFGEF2	0.862	R	31	Pooled_driver
+PTGS1	0.0635	F	30	Pooled_driver
+ITSN1	0.2875	F	29	Pooled_driver
+DICER1	0.0705	F	28	Pooled_driver
+ARID1B	0.02	F	27	Pooled_driver
+MED24	0.4115	R	26	Pooled_driver
+SF3B1	0.9435	F	26	Pooled_driver
+NOTCH1	0.0575	F	26	Pooled_driver
+AFF4	0.682	F	24	Pooled_driver
+EP300	0.0085	F	24	Pooled_driver
+SETDB1	0.967	F	23	Pooled_driver
+ARHGAP26	0.05	F	23	Pooled_driver
+NTN4	0.783	F	22	Pooled_driver
+NFATC4	0.1735	F	21	Pooled_driver
+CHD3	0.2125	F	21	Pooled_driver
+CEP290	0.1625	F	21	Pooled_driver
+SOS2	0.8565	F	20	Pooled_driver
+NUP107	0.877	F	20	Pooled_driver
+FOXP1	0.0035	F	20	Pooled_driver
+BRCA1	0.0045	F	19	Pooled_driver
+POLR2B	0.865	F	19	Pooled_driver
+CLTC	0.8705	F	19	Pooled_driver
+CLSPN	0.116	F	18	Pooled_driver
+TGFBR2	0.0345	F	18	Pooled_driver
+DLG1	0.8765	F	17	Pooled_driver
+MAP4K3	0.055	F	16	Pooled_driver
+MLH1	0.0335	F	16	Pooled_driver
+HDAC3	0.028	F	16	Pooled_driver
+BNC2	0.0515	F	16	Pooled_driver
+TBX3	0.058	F	15	Pooled_driver
+IREB2	0.848	F	15	Pooled_driver
+CASP1	0.031	F	15	Pooled_driver
+TCF12	0	F	15	Pooled_driver
+CLASP2	0.198	F	15	Pooled_driver
+NDRG1	0.877	F	14	Pooled_driver
+SOS1	0.7365	F	14	Pooled_driver
+NCF2	0.57	F	14	Pooled_driver
+CCAR1	0.012	F	13	Pooled_driver
+NCKAP1	0.2985	F	13	Pooled_driver
+ARHGAP35	0.0005	F	13	Pooled_driver
+ACTG2	0.769	F	13	Pooled_driver
+HLA-A	0.003	F	13	Pooled_driver
+FGFR3	0.8115	F	12	Pooled_driver
+DHX15	0.0075	F	12	Pooled_driver
+RTN4	0.1965	F	12	Pooled_driver
+MEN1	0.0285	F	12	Pooled_driver
+SYNCRIP	0.396	F	12	Pooled_driver
+NR4A2	0.191	F	12	Pooled_driver
+KLF6	0.15	F	11	Pooled_driver
+SMC1A	0.8855	F	11	Pooled_driver
+TNPO1	0.694	F	11	Pooled_driver
+CNOT3	0.9095	F	11	Pooled_driver
+CAT	0.836	F	11	Pooled_driver
+CHD1L	0.658	F	11	Pooled_driver
+CAST	0.0135	F	11	Pooled_driver
+EIF4A2	0.836	F	11	Pooled_driver
+NF2	0.0415	F	11	Pooled_driver
+PAX5	0.966	F	11	Pooled_driver
+ZNF814	0.904	C	11	Pooled_driver
+CUL1	0.213	F	10	Pooled_driver
+ZC3H11A	0.3245	F	10	Pooled_driver
+CYLD	0.035	F	10	Pooled_driver
+AHR	0.876	F	10	Pooled_driver
+PRRX1	0.9445	F	10	Pooled_driver
+PIK3R3	0.919	F	10	Pooled_driver
+ZMYM2	0.201	F	10	Pooled_driver
+ACO1	0.254	F	10	Pooled_driver
+ACVR1B	0.187	F	10	Pooled_driver
+ATIC	0.0305	F	10	Pooled_driver
+ERBB2IP	0.2055	F	9	Pooled_driver
+FXR1	0.1815	F	9	Pooled_driver
+CDC73	0.5795	F	9	Pooled_driver
+CCT5	0.8805	F	9	Pooled_driver
+TFDP1	0.922	F	9	Pooled_driver
+FAS	0.0895	F	8	Pooled_driver
+CUL3	0.1075	F	8	Pooled_driver
+MED17	0.8765	F	8	Pooled_driver
+PPP2R5C	0.966	F	8	Pooled_driver
+PSMA6	0.4425	F	8	Pooled_driver
+WIPF1	0.836	F	8	Pooled_driver
+LDHA	0.229	F	8	Pooled_driver
+CLOCK	0.126	F	8	Pooled_driver
+LCP1	0.014	F	8	Pooled_driver
+PIP5K1A	0.547	F	8	Pooled_driver
+RAD21	0.286	R	8	Pooled_driver
+CHEK2	0.2895	F	8	Pooled_driver
+BMPR2	0.0405	F	8	Pooled_driver
+HLA-B	0.0645	F	8	Pooled_driver
+PPP2R5A	0.048	F	7	Pooled_driver
+DIS3	0.8525	F	7	Pooled_driver
+CUL2	0.207	F	7	Pooled_driver
+HSPA8	0.768	F	7	Pooled_driver
+TFDP2	0.123	F	7	Pooled_driver
+KLF4	0.686	F	7	Pooled_driver
+CSNK1G3	0.0235	F	7	Pooled_driver
+ZFP36L2	0.0055	F	7	Pooled_driver
+GOLGA5	0.596	F	6	Pooled_driver
+ARFGAP1	0.4275	F	6	Pooled_driver
+FMR1	0.1195	F	6	Pooled_driver
+RHEB	0.886	F	6	Pooled_driver
+ATF1	0.622	F	6	Pooled_driver
+G3BP2	0.882	F	6	Pooled_driver
+SUZ12	0.003	F	6	Pooled_driver
+SF3A3	0.09	F	6	Pooled_driver
+NR2F2	0.8885	F	6	Pooled_driver
+SFPQ	0.0455	F	5	Pooled_driver
+RAD23B	0.1235	F	5	Pooled_driver
+SOX9	0.0655	F	5	Pooled_driver
+GNG2	0.0205	F	5	Pooled_driver
+CSDA	0.8635	F	4	Pooled_driver
+YBX1	0.8715	F	4	Pooled_driver
+CBFB	0.0055	F	4	Pooled_driver
+PPP2R1A	0.895	F	4	Pooled_driver
+HLF	0.8865	F	4	Pooled_driver
+ELF1	0.0395	F	4	Pooled_driver
+RBBP7	0.886	F	3	Pooled_driver
+HNRPDL	0.0195	F	3	Pooled_driver
+ATP6AP2	0.0415	F	2	Pooled_driver