Commits · fafa8d94984371a368288740f2a9078a9c3efb0b · Beatrice Tan / CNAprioritization · GitLab

25 Jan, 2018 1 commit
- Added input files for benchmarking. · fafa8d94
  Beatrice Tan authored Jan 25, 2018
  
  fafa8d94
24 Jan, 2018 13 commits
- Changed strcture of report functions to make it more clear. · ad2cb79c
  Beatrice Tan authored Jan 24, 2018
  
  ad2cb79c
- Change reports function to get more comprehensive dictionary with all results. · cada5187
  BeatriceTan authored Jan 24, 2018
  
  cada5187
- Updated README Getting Started. · f3262f41
  BeatriceTan authored Jan 24, 2018
  
  f3262f41
- Improved wrapper links. · 7e036510
  Beatrice Tan authored Jan 24, 2018
  
  7e036510
- Fixed errors. · dc2fa967
  Beatrice Tan authored Jan 24, 2018
  
  dc2fa967
- Added workflow image. · 56a0761f
  Beatrice F. Tan authored Jan 24, 2018
  
  56a0761f
- Added introduction to README. · 9e76e11e
  Beatrice Tan authored Jan 24, 2018
  
  9e76e11e
- Added firehose_get wrapper. · a6678f30
  Beatrice Tan authored Jan 24, 2018
  
  a6678f30
- Added gitignore. · 8064f41a
  Beatrice Tan authored Jan 24, 2018
  
  8064f41a
- Added script to run snakemake. · 46808938
  Beatrice Tan authored Jan 24, 2018
  
  46808938
- Updated files chapter to current structure/ · 155da162
  Beatrice Tan authored Jan 24, 2018
  
  155da162
- Added chapter to README and some comments. · 0f46d902
  Beatrice Tan authored Jan 24, 2018
  
  0f46d902
- Moved scripts to seperate directory, added content to README. · d5f7ffb4
  Beatrice Tan authored Jan 24, 2018
  
  d5f7ffb4
23 Jan, 2018 14 commits
- Improved plot function · 191a0c32
  Beatrice Tan authored Jan 23, 2018
  
  191a0c32
- Added function to make histogram of sizes of recurrent regions. · af88134a
  Beatrice Tan authored Jan 23, 2018
  
  af88134a
- Removed old rule. · e92c4b46
  Beatrice Tan authored Jan 23, 2018
  
  e92c4b46
- Fixed list structure. · 583300c2
  Beatrice Tan authored Jan 23, 2018
  
  583300c2
- Updated Getting Started with test files. · 790ff2f6
  Beatrice Tan authored Jan 23, 2018
  
  790ff2f6
- Small change README. · 6c7c1828
  Beatrice Tan authored Jan 23, 2018
  
  6c7c1828
- Added table with config settings. · 5efebfa6
  Beatrice Tan authored Jan 23, 2018
  
  5efebfa6
- Added bold parts to README. · a47a4171
  Beatrice Tan authored Jan 23, 2018
  
  a47a4171
- Changed README. · cdf55c5f
  Beatrice Tan authored Jan 23, 2018
  
  cdf55c5f
- Updated README and added some explanatory comments. · eccdd20e
  Beatrice Tan authored Jan 23, 2018
  
  eccdd20e
- Added rule to compare to 50 GO terms and updated install gistic2 script. · 20499899
  Beatrice Tan authored Jan 23, 2018
  
  20499899
- Added help rule to print all docstrings. · b2e5a9d2
  Beatrice Tan authored Jan 23, 2018
  
  b2e5a9d2
- Added docstrings to the snakemake rules. · 70db002b
  Beatrice Tan authored Jan 23, 2018
  
  70db002b
- Removed gistic2 conda recipe. · 427c5d5a
  Beatrice Tan authored Jan 23, 2018
  
  427c5d5a
22 Jan, 2018 6 commits
- Updated script to install gistic2. · 3f4d8a1b
  Beatrice Tan authored Jan 22, 2018
  
  3f4d8a1b
- Added rule and script to install gistic2 on local machine. · 1f9078ac
  Beatrice Tan authored Jan 22, 2018
  
  1f9078ac
- Merge branch 'master' of gitlab.com:BeatriceTan/PrioritizationCNAs · 85aafd35
  Beatrice Tan authored Jan 22, 2018
  
  85aafd35
- Updated preprocess rules. · b6b4f7bd
  Beatrice Tan authored Jan 22, 2018
  
  b6b4f7bd
- Solved confusion on bp/kbp/mbp in tables and plots. · f2d42153
  BeatriceTan authored Jan 22, 2018
  
  f2d42153
- Updated calls to classes. · 99a1bc63
  Beatrice Tan authored Jan 22, 2018
  
  99a1bc63
21 Jan, 2018 2 commits
- Added function to make report of control vs no control. · 81a3d995
  Beatrice Tan authored Jan 21, 2018
  
  81a3d995
- Different input possible: either input file or info to download file from Firehose. · 02a5d983
  Beatrice Tan authored Jan 21, 2018
  
  02a5d983
20 Jan, 2018 3 commits
- Finalized rules to download firehose data and preprosses it. · 840bdc75
  Beatrice Tan authored Jan 20, 2018
  
  840bdc75
- Updated gistic2 wrapper to work with cnv file if needed. · b3581b09
  Beatrice Tan authored Jan 20, 2018
  
  b3581b09
- Added option to donwload firehose data and preprocess it to suitable input. · 3c29a4dd
  Beatrice Tan authored Jan 20, 2018
  
  3c29a4dd
19 Jan, 2018 1 commit
- Updated file structure. · 98fea6d9
  Beatrice Tan authored Jan 19, 2018
  
  98fea6d9