Commits · ea286e13ea9664ce43b807d0645900e1e15ea5e7 · Beatrice Tan / CNAprioritization

19 Feb, 2018 3 commits
- Updated report. · ea286e13
  Beatrice Tan authored Feb 19, 2018
  
  ea286e13
- Fixed problem with GO enrichment analysis. · 57c59da7
  Beatrice Tan authored Feb 19, 2018
  
  57c59da7
- Updated settings. · 153ad922
  Beatrice Tan authored Feb 19, 2018
  
  153ad922
15 Feb, 2018 2 commits
- Updated circos rule. · 8ffa81e4
  Beatrice Tan authored Feb 15, 2018
  
  8ffa81e4
- Improved structure of rules and functions. · 1a6403cd
  Beatrice Tan authored Feb 15, 2018
  
  1a6403cd
08 Feb, 2018 4 commits
- Update Circos.smk · 0233d1b2
  Beatrice Tan authored Feb 08, 2018
  
  0233d1b2
- Output all updated. · db6d0312
  Beatrice Tan authored Feb 08, 2018
  
  db6d0312
- Updated output. · e0a47ccb
  Beatrice Tan authored Feb 08, 2018
  
  e0a47ccb
- Updated circos gene plots. · 2274b827
  Beatrice Tan authored Feb 08, 2018
  
  2274b827
07 Feb, 2018 8 commits
- Fixed merge conflicts. · 80a92bce
  Beatrice Tan authored Feb 07, 2018
  
  80a92bce
- Updated settings and all input. · 4a39be4b
  Beatrice Tan authored Feb 07, 2018
  
  4a39be4b
- Updated colors of circos zoom plots. · e1f63a7a
  Beatrice Tan authored Feb 07, 2018
  
  e1f63a7a
- Updated reports. · f17dcbd8
  Beatrice Tan authored Feb 07, 2018
  
  f17dcbd8
- Made names of rules more understandable. · b6e501b7
  Beatrice Tan authored Feb 07, 2018
  
  b6e501b7
- Updated wrappers. · 80b3c845
  Beatrice Tan authored Feb 07, 2018
  
  80b3c845
- Added script to plot precision and recall with different sample sizes. · 6869823f
  Beatrice Tan authored Feb 07, 2018
  
  6869823f
- Added snakemake visualization of workflow. · d320be6a
  Beatrice Tan authored Feb 07, 2018
  
  d320be6a
05 Feb, 2018 4 commits
- Updated GO enrichment analysis to save plot. · 42ec6850
  BeatriceTan authored Feb 05, 2018
  
  42ec6850
- Removed errors. · c246d616
  Tan authored Feb 05, 2018
  
  c246d616
- Added visualiziation of enriched GO terms. · ddbe27d0
  Beatrice Tan authored Feb 05, 2018
  
  ddbe27d0
- Updated GO scripts to use provided input file to map GO terms instead of... · 397c9d9d
  Beatrice Tan authored Feb 05, 2018
```
Updated GO scripts to use provided input file to map GO terms instead of frequently failed biomart download.
```
  397c9d9d
04 Feb, 2018 2 commits
- Added function to Report sizes. · e70aeb29
  Beatrice Tan authored Feb 04, 2018
  
  e70aeb29
- Updated plots for samples sizes to plot both tools. · 71025db0
  Beatrice Tan authored Feb 04, 2018
  
  71025db0
03 Feb, 2018 6 commits
- Merge branch 'master' of https://git.lumc.nl/bftan/CNAprioritization · 25d1700c
  Beatrice Tan authored Feb 03, 2018
  
  25d1700c
- Merged. · cc4e5d19
  Beatrice Tan authored Feb 03, 2018
  
  cc4e5d19
- Updated sample size report for RUBIC files. · 815b2823
  Tan authored Feb 03, 2018
  
  815b2823
- Merged. · 2d44810b
  Tan authored Feb 03, 2018
  
  2d44810b
- Added circos zoomed plot. · 90670433
  Beatrice Tan authored Feb 03, 2018
  
  90670433
- Updated sample size test. · 0c65624f
  Tan authored Feb 03, 2018
  
  0c65624f
02 Feb, 2018 7 commits
- Merge branch 'master' of https://git.lumc.nl/bftan/CNAprioritization · 35d2dcf8
  Beatrice Tan authored Feb 02, 2018
  
  35d2dcf8
- Made function names more explanatory and code better readable. · 75205c4f
  Beatrice Tan authored Feb 02, 2018
  
  75205c4f
- Updated run rule for running different sample sizes with GISTIC2. · 3e2c380f
  Tan authored Feb 02, 2018
  
  3e2c380f
- Run cluster updated. · 0c50f100
  Tan authored Feb 02, 2018
  
  0c50f100
- Updated config. · 690098a6
  Tan authored Feb 02, 2018
  
  690098a6
- config.yaml · 33550014
  Tan authored Feb 02, 2018
  
  33550014
- Removed ensembl function. · 2d3389cc
  Beatrice Tan authored Feb 02, 2018
  
  2d3389cc
01 Feb, 2018 4 commits
- Update run_pipeline_cluster.sh to prevent the need to specify config an snakefile location. · f7bc787b
  Beatrice Tan authored Feb 01, 2018
  
  f7bc787b
- Update GISTIC2.smk · ae28e193
  Beatrice Tan authored Feb 01, 2018
  
  ae28e193
- Update GISTIC2.smk · d164e88d
  Beatrice Tan authored Feb 01, 2018
  
  d164e88d
- Update wrapper.py for GISTIC install. · 24140414
  Beatrice Tan authored Feb 01, 2018
  
  24140414