Commits · c339d65e1c974b9aeacce5afc59bc6705e838e87 · Beatrice Tan / CNAprioritization

03 Feb, 2018 2 commits
- Merged. · cc4e5d19
  Beatrice Tan authored Feb 03, 2018
  
  cc4e5d19
- Updated sample size test. · 0c65624f
  Tan authored Feb 03, 2018
  
  0c65624f
02 Feb, 2018 3 commits
- Updated run rule for running different sample sizes with GISTIC2. · 3e2c380f
  Tan authored Feb 02, 2018
  
  3e2c380f
- config.yaml · 33550014
  Tan authored Feb 02, 2018
  
  33550014
- Removed ensembl function. · 2d3389cc
  Beatrice Tan authored Feb 02, 2018
  
  2d3389cc
01 Feb, 2018 1 commit
- Update config.yaml · c831d14d
  Beatrice Tan authored Feb 01, 2018
  
  c831d14d
31 Jan, 2018 2 commits
- Updated for cluster and fixed bed rule dependency. · aebc3574
  Tan authored Jan 31, 2018
  
  aebc3574
- Updated config for shark. · 625b27fb
  Tan authored Jan 31, 2018
  
  625b27fb
30 Jan, 2018 3 commits
- Updated submit script and sample sizess test. · 6babeff8
  Tan authored Jan 30, 2018
  
  6babeff8
- Updated submit script. · 1c6a26f1
  Tan authored Jan 30, 2018
  
  1c6a26f1
- Added boxplot for sizes. · 9eede366
  Beatrice Tan authored Jan 30, 2018
  
  9eede366
29 Jan, 2018 3 commits
- Updated visualizations. · 781db167
  Beatrice Tan authored Jan 29, 2018
  
  781db167
- Updated cluster submit. · fb597255
  Tan authored Jan 29, 2018
  
  fb597255
- Fixed small mistakes. · 0ba99b31
  Beatrice Tan authored Jan 29, 2018
  
  0ba99b31
28 Jan, 2018 2 commits
- Updated report on sample sizes. · 4592528e
  Beatrice Tan authored Jan 28, 2018
  
  4592528e
- Added settings and table with all recurrent regions. · 7c36cd45
  Beatrice Tan authored Jan 28, 2018
  
  7c36cd45
26 Jan, 2018 1 commit
- Improved gene ID - name transformation for reports. · b17d4862
  Beatrice Tan authored Jan 26, 2018
  
  b17d4862
25 Jan, 2018 2 commits
- Fixed function to make rubic marker file. · c4120f2d
  BeatriceTan authored Jan 25, 2018
  
  c4120f2d
- Updated conda requirements and file locations. · acc6235f
  BeatriceTan authored Jan 25, 2018
  
  acc6235f
24 Jan, 2018 2 commits
- Changed strcture of report functions to make it more clear. · ad2cb79c
  Beatrice Tan authored Jan 24, 2018
  
  ad2cb79c
- Fixed errors. · dc2fa967
  Beatrice Tan authored Jan 24, 2018
  
  dc2fa967
22 Jan, 2018 1 commit
- Updated script to install gistic2. · 3f4d8a1b
  Beatrice Tan authored Jan 22, 2018
  
  3f4d8a1b
21 Jan, 2018 2 commits
- Added function to make report of control vs no control. · 81a3d995
  Beatrice Tan authored Jan 21, 2018
  
  81a3d995
- Different input possible: either input file or info to download file from Firehose. · 02a5d983
  Beatrice Tan authored Jan 21, 2018
  
  02a5d983
11 Jan, 2018 1 commit
- Added function to make files with gene lists and updated segmentation report. · 44d264e7
  Beatrice Tan authored Jan 11, 2018
  
  44d264e7
05 Jan, 2018 3 commits
- Improved config file and updated workdir in rules. · 3e3420b4
  Beatrice Tan authored Jan 05, 2018
  
  3e3420b4
- Fixed working directory problem: possible to write output to different folder. · 963296f4
  Beatrice Tan authored Jan 05, 2018
  
  963296f4
- Small updates. · 5a810bd7
  Beatrice Tan authored Jan 05, 2018
  
  5a810bd7
04 Jan, 2018 1 commit
- Restructured snakemake rules. · 6f785e3e
  Beatrice Tan authored Jan 04, 2018
  
  6f785e3e
03 Jan, 2018 3 commits
- Updated rubic snakefile. · 252ecc19
  Beatrice Tan authored Jan 03, 2018
  
  252ecc19
- Again. · 3a1325eb
  Beatrice Tan authored Jan 03, 2018
  
  3a1325eb
- Added snakefile and config file. · 0c2d0247
  Beatrice Tan authored Jan 03, 2018
  
  0c2d0247