Commits · aebc3574746c6c7acc8728284fae3f6773c7a1a6 · Beatrice Tan / CNAprioritization

31 Jan, 2018 8 commits
- Updated for cluster and fixed bed rule dependency. · aebc3574
  Tan authored Jan 31, 2018
  
  aebc3574
- Merged shark and pc. · 2defc593
  Tan authored Jan 31, 2018
  
  2defc593
- Updated config for shark. · 625b27fb
  Tan authored Jan 31, 2018
  
  625b27fb
- Added P-value comparison. · 7f42daed
  BeatriceTan authored Jan 31, 2018
  
  7f42daed
- Fixed split errors. · 7d081506
  BeatriceTan authored Jan 31, 2018
  
  7d081506
- Updated report scripts based on new structure. · a61e8e72
  BeatriceTan authored Jan 31, 2018
  
  a61e8e72
- Split report functions to seperate files. · 44467197
  BeatriceTan authored Jan 31, 2018
  
  44467197
- Counts range of raw CN values. · 6401d987
  BeatriceTan authored Jan 31, 2018
  
  6401d987
30 Jan, 2018 13 commits
- Updated submit script and sample sizess test. · 6babeff8
  Tan authored Jan 30, 2018
  
  6babeff8
- Merge branch 'master' of gitlab.com:BeatriceTan/PrioritizationCNAs · c2324bc0
  Beatrice Tan authored Jan 30, 2018
  
  c2324bc0
- Added input files. · f5eb11e0
  Beatrice Tan authored Jan 30, 2018
  
  f5eb11e0
- Updated submit script. · 1c6a26f1
  Tan authored Jan 30, 2018
  
  1c6a26f1
- Attempt to plot regions. · ed42f984
  Beatrice Tan authored Jan 30, 2018
  
  ed42f984
- Comparison bed files. · 914ac322
  Beatrice Tan authored Jan 30, 2018
  
  914ac322
- Seperated circos rules into seperate file. · e56d6386
  Beatrice Tan authored Jan 30, 2018
  
  e56d6386
- Added bedtools intersect to compare regions. · 92c80ae7
  Beatrice Tan authored Jan 30, 2018
  
  92c80ae7
- Split recurrent regions rules into seperate files. · 25396c69
  Beatrice Tan authored Jan 30, 2018
  
  25396c69
- Updated venn diagram. · a6e291a4
  Beatrice Tan authored Jan 30, 2018
  
  a6e291a4
- Added boxplot for sizes. · 9eede366
  Beatrice Tan authored Jan 30, 2018
  
  9eede366
- Updated README. · 8133c44a
  Beatrice Tan authored Jan 30, 2018
  
  8133c44a
- Cluster script updated. · b90c9063
  Beatrice Tan authored Jan 30, 2018
  
  b90c9063
29 Jan, 2018 8 commits
- Updated visualizations. · 781db167
  Beatrice Tan authored Jan 29, 2018
  
  781db167
- Fixed conflict submit script. · 838ad220
  Beatrice Tan authored Jan 29, 2018
  
  838ad220
- Updated instructions for installation. · 4624f5d6
  Beatrice Tan authored Jan 29, 2018
  
  4624f5d6
- Updated cluster submit. · fb597255
  Tan authored Jan 29, 2018
  
  fb597255
- Updated cluster submit script. · 9649db30
  Beatrice Tan authored Jan 29, 2018
  
  9649db30
- Updated shell script to run pipeline. · eef7265f
  Beatrice Tan authored Jan 29, 2018
  
  eef7265f
- Updated environments. · e43b1fe7
  Beatrice Tan authored Jan 29, 2018
  
  e43b1fe7
- Fixed small mistakes. · 0ba99b31
  Beatrice Tan authored Jan 29, 2018
  
  0ba99b31
28 Jan, 2018 3 commits
- Updated overlap function and added submit script. · 7a860865
  Beatrice Tan authored Jan 28, 2018
  
  7a860865
- Updated report on sample sizes. · 4592528e
  Beatrice Tan authored Jan 28, 2018
  
  4592528e
- Added settings and table with all recurrent regions. · 7c36cd45
  Beatrice Tan authored Jan 28, 2018
  
  7c36cd45
27 Jan, 2018 3 commits
- Updated circos. · 331a4061
  Beatrice Tan authored Jan 27, 2018
  
  331a4061
- Updated reports. · 1b50acb5
  Beatrice Tan authored Jan 27, 2018
  
  1b50acb5
- Added circos visualization. · a5de6c79
  Beatrice Tan authored Jan 27, 2018
  
  a5de6c79
26 Jan, 2018 5 commits
- Reference file as input for rules to use correct ensembl version. · 88b15b8c
  Beatrice Tan authored Jan 26, 2018
  
  88b15b8c
- Updated imports. · cddbbceb
  Beatrice Tan authored Jan 26, 2018
  
  cddbbceb
- Splitted report functions in two seperate scripts. · 4e7e93dd
  Beatrice Tan authored Jan 26, 2018
  
  4e7e93dd
- Updated gitignore. · d8220aba
  Beatrice Tan authored Jan 26, 2018
  
  d8220aba
- Added option to use all gene ontologies for GO enrichment analysis. · 9b73d366
  Beatrice Tan authored Jan 26, 2018
  
  9b73d366