Commits · 914ac3220b55f684a7d8a35fa3224c6f706ca34d · Beatrice Tan / CNAprioritization

30 Jan, 2018 8 commits
- Comparison bed files. · 914ac322
  Beatrice Tan authored Jan 30, 2018
  
  914ac322
- Seperated circos rules into seperate file. · e56d6386
  Beatrice Tan authored Jan 30, 2018
  
  e56d6386
- Added bedtools intersect to compare regions. · 92c80ae7
  Beatrice Tan authored Jan 30, 2018
  
  92c80ae7
- Split recurrent regions rules into seperate files. · 25396c69
  Beatrice Tan authored Jan 30, 2018
  
  25396c69
- Updated venn diagram. · a6e291a4
  Beatrice Tan authored Jan 30, 2018
  
  a6e291a4
- Added boxplot for sizes. · 9eede366
  Beatrice Tan authored Jan 30, 2018
  
  9eede366
- Updated README. · 8133c44a
  Beatrice Tan authored Jan 30, 2018
  
  8133c44a
- Cluster script updated. · b90c9063
  Beatrice Tan authored Jan 30, 2018
  
  b90c9063
29 Jan, 2018 8 commits
- Updated visualizations. · 781db167
  Beatrice Tan authored Jan 29, 2018
  
  781db167
- Fixed conflict submit script. · 838ad220
  Beatrice Tan authored Jan 29, 2018
  
  838ad220
- Updated instructions for installation. · 4624f5d6
  Beatrice Tan authored Jan 29, 2018
  
  4624f5d6
- Updated cluster submit. · fb597255
  Tan authored Jan 29, 2018
  
  fb597255
- Updated cluster submit script. · 9649db30
  Beatrice Tan authored Jan 29, 2018
  
  9649db30
- Updated shell script to run pipeline. · eef7265f
  Beatrice Tan authored Jan 29, 2018
  
  eef7265f
- Updated environments. · e43b1fe7
  Beatrice Tan authored Jan 29, 2018
  
  e43b1fe7
- Fixed small mistakes. · 0ba99b31
  Beatrice Tan authored Jan 29, 2018
  
  0ba99b31
28 Jan, 2018 3 commits
- Updated overlap function and added submit script. · 7a860865
  Beatrice Tan authored Jan 28, 2018
  
  7a860865
- Updated report on sample sizes. · 4592528e
  Beatrice Tan authored Jan 28, 2018
  
  4592528e
- Added settings and table with all recurrent regions. · 7c36cd45
  Beatrice Tan authored Jan 28, 2018
  
  7c36cd45
27 Jan, 2018 3 commits
- Updated circos. · 331a4061
  Beatrice Tan authored Jan 27, 2018
  
  331a4061
- Updated reports. · 1b50acb5
  Beatrice Tan authored Jan 27, 2018
  
  1b50acb5
- Added circos visualization. · a5de6c79
  Beatrice Tan authored Jan 27, 2018
  
  a5de6c79
26 Jan, 2018 7 commits
- Reference file as input for rules to use correct ensembl version. · 88b15b8c
  Beatrice Tan authored Jan 26, 2018
  
  88b15b8c
- Updated imports. · cddbbceb
  Beatrice Tan authored Jan 26, 2018
  
  cddbbceb
- Splitted report functions in two seperate scripts. · 4e7e93dd
  Beatrice Tan authored Jan 26, 2018
  
  4e7e93dd
- Updated gitignore. · d8220aba
  Beatrice Tan authored Jan 26, 2018
  
  d8220aba
- Added option to use all gene ontologies for GO enrichment analysis. · 9b73d366
  Beatrice Tan authored Jan 26, 2018
  
  9b73d366
- Improved gene ID - name transformation for reports. · b17d4862
  Beatrice Tan authored Jan 26, 2018
  
  b17d4862
- Clearified readme. · 3d96b58c
  Beatrice Tan authored Jan 26, 2018
  
  3d96b58c
25 Jan, 2018 9 commits
- Small improvement plot. · bf9299ab
  BeatriceTan authored Jan 25, 2018
  
  bf9299ab
- Improved size plot. · 870b91dd
  BeatriceTan authored Jan 25, 2018
  
  870b91dd
- Fixed gene list errors. · 57d887c0
  BeatriceTan authored Jan 25, 2018
  
  57d887c0
- Added required packages to README. · 072dd2bf
  BeatriceTan authored Jan 25, 2018
  
  072dd2bf
- Fixed function to make rubic marker file. · c4120f2d
  BeatriceTan authored Jan 25, 2018
  
  c4120f2d
- Added timestamp for benchmark. · 8495797e
  BeatriceTan authored Jan 25, 2018
  
  8495797e
- Removed small errors. · f1bab812
  BeatriceTan authored Jan 25, 2018
  
  f1bab812
- Updated conda requirements and file locations. · acc6235f
  BeatriceTan authored Jan 25, 2018
  
  acc6235f
- Added input files for benchmarking. · fafa8d94
  Beatrice Tan authored Jan 25, 2018
  
  fafa8d94
24 Jan, 2018 2 commits
- Changed strcture of report functions to make it more clear. · ad2cb79c
  Beatrice Tan authored Jan 24, 2018
  
  ad2cb79c
- Change reports function to get more comprehensive dictionary with all results. · cada5187
  BeatriceTan authored Jan 24, 2018
  
  cada5187