Commits · 88b15b8c1b6cad67542463d485e4cd00bfe15e0d · Beatrice Tan / CNAprioritization

26 Jan, 2018 7 commits
- Reference file as input for rules to use correct ensembl version. · 88b15b8c
  Beatrice Tan authored Jan 26, 2018
  
  88b15b8c
- Updated imports. · cddbbceb
  Beatrice Tan authored Jan 26, 2018
  
  cddbbceb
- Splitted report functions in two seperate scripts. · 4e7e93dd
  Beatrice Tan authored Jan 26, 2018
  
  4e7e93dd
- Updated gitignore. · d8220aba
  Beatrice Tan authored Jan 26, 2018
  
  d8220aba
- Added option to use all gene ontologies for GO enrichment analysis. · 9b73d366
  Beatrice Tan authored Jan 26, 2018
  
  9b73d366
- Improved gene ID - name transformation for reports. · b17d4862
  Beatrice Tan authored Jan 26, 2018
  
  b17d4862
- Clearified readme. · 3d96b58c
  Beatrice Tan authored Jan 26, 2018
  
  3d96b58c
25 Jan, 2018 9 commits
- Small improvement plot. · bf9299ab
  BeatriceTan authored Jan 25, 2018
  
  bf9299ab
- Improved size plot. · 870b91dd
  BeatriceTan authored Jan 25, 2018
  
  870b91dd
- Fixed gene list errors. · 57d887c0
  BeatriceTan authored Jan 25, 2018
  
  57d887c0
- Added required packages to README. · 072dd2bf
  BeatriceTan authored Jan 25, 2018
  
  072dd2bf
- Fixed function to make rubic marker file. · c4120f2d
  BeatriceTan authored Jan 25, 2018
  
  c4120f2d
- Added timestamp for benchmark. · 8495797e
  BeatriceTan authored Jan 25, 2018
  
  8495797e
- Removed small errors. · f1bab812
  BeatriceTan authored Jan 25, 2018
  
  f1bab812
- Updated conda requirements and file locations. · acc6235f
  BeatriceTan authored Jan 25, 2018
  
  acc6235f
- Added input files for benchmarking. · fafa8d94
  Beatrice Tan authored Jan 25, 2018
  
  fafa8d94
24 Jan, 2018 13 commits
- Changed strcture of report functions to make it more clear. · ad2cb79c
  Beatrice Tan authored Jan 24, 2018
  
  ad2cb79c
- Change reports function to get more comprehensive dictionary with all results. · cada5187
  BeatriceTan authored Jan 24, 2018
  
  cada5187
- Updated README Getting Started. · f3262f41
  BeatriceTan authored Jan 24, 2018
  
  f3262f41
- Improved wrapper links. · 7e036510
  Beatrice Tan authored Jan 24, 2018
  
  7e036510
- Fixed errors. · dc2fa967
  Beatrice Tan authored Jan 24, 2018
  
  dc2fa967
- Added workflow image. · 56a0761f
  Beatrice F. Tan authored Jan 24, 2018
  
  56a0761f
- Added introduction to README. · 9e76e11e
  Beatrice Tan authored Jan 24, 2018
  
  9e76e11e
- Added firehose_get wrapper. · a6678f30
  Beatrice Tan authored Jan 24, 2018
  
  a6678f30
- Added gitignore. · 8064f41a
  Beatrice Tan authored Jan 24, 2018
  
  8064f41a
- Added script to run snakemake. · 46808938
  Beatrice Tan authored Jan 24, 2018
  
  46808938
- Updated files chapter to current structure/ · 155da162
  Beatrice Tan authored Jan 24, 2018
  
  155da162
- Added chapter to README and some comments. · 0f46d902
  Beatrice Tan authored Jan 24, 2018
  
  0f46d902
- Moved scripts to seperate directory, added content to README. · d5f7ffb4
  Beatrice Tan authored Jan 24, 2018
  
  d5f7ffb4
23 Jan, 2018 11 commits
- Improved plot function · 191a0c32
  Beatrice Tan authored Jan 23, 2018
  
  191a0c32
- Added function to make histogram of sizes of recurrent regions. · af88134a
  Beatrice Tan authored Jan 23, 2018
  
  af88134a
- Removed old rule. · e92c4b46
  Beatrice Tan authored Jan 23, 2018
  
  e92c4b46
- Fixed list structure. · 583300c2
  Beatrice Tan authored Jan 23, 2018
  
  583300c2
- Updated Getting Started with test files. · 790ff2f6
  Beatrice Tan authored Jan 23, 2018
  
  790ff2f6
- Small change README. · 6c7c1828
  Beatrice Tan authored Jan 23, 2018
  
  6c7c1828
- Added table with config settings. · 5efebfa6
  Beatrice Tan authored Jan 23, 2018
  
  5efebfa6
- Added bold parts to README. · a47a4171
  Beatrice Tan authored Jan 23, 2018
  
  a47a4171
- Changed README. · cdf55c5f
  Beatrice Tan authored Jan 23, 2018
  
  cdf55c5f
- Updated README and added some explanatory comments. · eccdd20e
  Beatrice Tan authored Jan 23, 2018
  
  eccdd20e
- Added rule to compare to 50 GO terms and updated install gistic2 script. · 20499899
  Beatrice Tan authored Jan 23, 2018
  
  20499899