Commits · 397c9d9dca1314db6694abdea31ff363b82bc9f9 · Beatrice Tan / CNAprioritization

05 Feb, 2018 1 commit
- Updated GO scripts to use provided input file to map GO terms instead of... · 397c9d9d
  Beatrice Tan authored Feb 05, 2018
```
Updated GO scripts to use provided input file to map GO terms instead of frequently failed biomart download.
```
  397c9d9d
04 Feb, 2018 2 commits
- Added function to Report sizes. · e70aeb29
  Beatrice Tan authored Feb 04, 2018
  
  e70aeb29
- Updated plots for samples sizes to plot both tools. · 71025db0
  Beatrice Tan authored Feb 04, 2018
  
  71025db0
03 Feb, 2018 6 commits
- Merge branch 'master' of https://git.lumc.nl/bftan/CNAprioritization · 25d1700c
  Beatrice Tan authored Feb 03, 2018
  
  25d1700c
- Merged. · cc4e5d19
  Beatrice Tan authored Feb 03, 2018
  
  cc4e5d19
- Updated sample size report for RUBIC files. · 815b2823
  Tan authored Feb 03, 2018
  
  815b2823
- Merged. · 2d44810b
  Tan authored Feb 03, 2018
  
  2d44810b
- Added circos zoomed plot. · 90670433
  Beatrice Tan authored Feb 03, 2018
  
  90670433
- Updated sample size test. · 0c65624f
  Tan authored Feb 03, 2018
  
  0c65624f
02 Feb, 2018 7 commits
- Merge branch 'master' of https://git.lumc.nl/bftan/CNAprioritization · 35d2dcf8
  Beatrice Tan authored Feb 02, 2018
  
  35d2dcf8
- Made function names more explanatory and code better readable. · 75205c4f
  Beatrice Tan authored Feb 02, 2018
  
  75205c4f
- Updated run rule for running different sample sizes with GISTIC2. · 3e2c380f
  Tan authored Feb 02, 2018
  
  3e2c380f
- Run cluster updated. · 0c50f100
  Tan authored Feb 02, 2018
  
  0c50f100
- Updated config. · 690098a6
  Tan authored Feb 02, 2018
  
  690098a6
- config.yaml · 33550014
  Tan authored Feb 02, 2018
  
  33550014
- Removed ensembl function. · 2d3389cc
  Beatrice Tan authored Feb 02, 2018
  
  2d3389cc
01 Feb, 2018 22 commits
- Update run_pipeline_cluster.sh to prevent the need to specify config an snakefile location. · f7bc787b
  Beatrice Tan authored Feb 01, 2018
  
  f7bc787b
- Update GISTIC2.smk · ae28e193
  Beatrice Tan authored Feb 01, 2018
  
  ae28e193
- Update GISTIC2.smk · d164e88d
  Beatrice Tan authored Feb 01, 2018
  
  d164e88d
- Update wrapper.py for GISTIC install. · 24140414
  Beatrice Tan authored Feb 01, 2018
  
  24140414
- Enabled installing gistic when directory already exists. · 3aa9679c
  Beatrice Tan authored Feb 01, 2018
  
  3aa9679c
- Added workflow image. · 46b3980c
  Beatrice Tan authored Feb 01, 2018
  
  46b3980c
- Update README.md · b080cfda
  Beatrice Tan authored Feb 01, 2018
  
  b080cfda
- Update README.md · 2b030fc3
  Beatrice Tan authored Feb 01, 2018
  
  2b030fc3
- Update README.md · 36bea04a
  Beatrice Tan authored Feb 01, 2018
  
  36bea04a
- Update README.md · 5696831c
  Beatrice Tan authored Feb 01, 2018
  
  5696831c
- Update README.md · 0440ad53
  Beatrice Tan authored Feb 01, 2018
  
  0440ad53
- Update README.md · 9fc9d828
  Beatrice Tan authored Feb 01, 2018
  
  9fc9d828
- Updated README.md with correct info. · 0c21158a
  Beatrice Tan authored Feb 01, 2018
  
  0c21158a
- Removed unnecessary print. · 26f20c5d
  Beatrice Tan authored Feb 01, 2018
  
  26f20c5d
- Update Circos.yaml · 21956d3c
  Beatrice Tan authored Feb 01, 2018
  
  21956d3c
- Update README.md · 2e656ae2
  Mei authored Feb 01, 2018
  
  2e656ae2
- Update Circos.py · 574ddcdf
  Beatrice Tan authored Feb 01, 2018
  
  574ddcdf
- Changed path into parameter. · 8a70edc2
  Beatrice Tan authored Feb 01, 2018
  
  8a70edc2
- Removed print with old parameter. · e1120ae8
  Beatrice Tan authored Feb 01, 2018
  
  e1120ae8
- Delete run_pipeline.sh · 3c9a051b
  Beatrice Tan authored Feb 01, 2018
  
  3c9a051b
- Update Snakefile · 1335a2e5
  Beatrice Tan authored Feb 01, 2018
  
  1335a2e5
- Update config.yaml · c831d14d
  Beatrice Tan authored Feb 01, 2018
  
  c831d14d
31 Jan, 2018 2 commits
- Merge branch 'master' of https://gitlab.com/BeatriceTan/PrioritizationCNAs · 063e5890
  BeatriceTan authored Jan 31, 2018
  
  063e5890
- Fixed P-value plot. · 82ca2106
  BeatriceTan authored Jan 31, 2018
  
  82ca2106